PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095280.4
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 123aa    MW: 13659.8 Da    PI: 6.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095280.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-0655941054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Cucsa.095280.4 55 KERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 94
                    7899999***********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-1044103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6934594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1247108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-453100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-65599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MIASSLCNAS AKFPAEVMEV ETMMEQKRTL CSVDESALTS LTPKRHKTDF SISSKERKDK  60
LGERIMALQQ LVSPYGKTDT ASVLLEAMEY IQFLHEQVKV LSAPYLQSTP TVLLQVSLGW  120
TF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818742e-51LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132612e-51LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152130.14e-78PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU22e-41BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0A0KYW49e-77A0A0A0KYW4_CUCSA; Uncharacterized protein
STRINGXP_004152130.12e-77(Cucumis sativus)
STRINGXP_004156961.12e-77(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-43bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]