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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.095280.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 124aa MW: 13730 Da PI: 8.0691 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.6e-06 | 12 | 50 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R d++ +++ L++l+ + +K + a++L +A+eYI+ L Cucsa.095280.3 12 ERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 50 57899999*********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.813 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0013 | 9 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.11E-11 | 11 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-9 | 11 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-6 | 13 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MVFQVLTLFL QERKDKLGER IMALQQLVSP YGKTDTASVL LEAMEYIQFL HEQVKVLSAP 60 YLQSTPTVLL QEVEPCSHSL RSRGLCLVPI SCTAGVARSN GADIWAPVKT ISPKFEKHIS 120 PFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 2e-79 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 2e-79 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152130.1 | 1e-79 | PREDICTED: transcription factor bHLH113-like | ||||
Refseq | XP_008454045.1 | 1e-79 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Swissprot | Q7XJU2 | 9e-51 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0A0KYW4 | 3e-78 | A0A0A0KYW4_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3BYX6 | 3e-78 | A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2 | ||||
STRING | XP_008454043.1 | 2e-78 | (Cucumis melo) | ||||
STRING | XP_004152130.1 | 5e-79 | (Cucumis sativus) | ||||
STRING | XP_004156961.1 | 5e-79 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 4e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.095280.3 |
Publications ? help Back to Top | |||
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