PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095210.1
Common NameCsa_4G011770, LOC101217627
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 239aa    MW: 27292.9 Da    PI: 9.9667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.72.1e-48141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelv +yL k++ +++l++  vi+++d+++++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+
  Cucsa.095210.1  14 LPPGFRFYPTDEELVLQYLIKRALSSPLPA-AVIPDADVCRFDPWDLPGD---LERERYFFSTREAKYSNGRRSNRATGSGYWKATGIDRKIVST 104
                     79****************************.89***************44...46899***********************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++l+g kktLvfy+g+ p+g +tdWvmheyrl
  Cucsa.095210.1 105 kENRLIGFKKTLVFYTGKPPNGLRTDWVMHEYRL 138
                     67778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-587170IPR003441NAC domain
PROSITE profilePS5100556.214170IPR003441NAC domain
PfamPF023655.4E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEKFTSLKNG VLRLPPGFRF YPTDEELVLQ YLIKRALSSP LPAAVIPDAD VCRFDPWDLP  60
GDLERERYFF STREAKYSNG RRSNRATGSG YWKATGIDRK IVSTKENRLI GFKKTLVFYT  120
GKPPNGLRTD WVMHEYRLVG SSEAPPSSFN DGLELPTLNP NWVLCRIFLK KRSTRERDEK  180
KKNNCKPVFH QFLRTRNDTD LNLSPCSSSS GSSGVTEISV NNHQEQEETS SCNSFRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501217615171NO APICAL MERISTEM PROTEIN
1ut4_B1e-501217615171NO APICAL MERISTEM PROTEIN
1ut7_A1e-501217615171NO APICAL MERISTEM PROTEIN
1ut7_B1e-501217615171NO APICAL MERISTEM PROTEIN
4dul_A1e-501217615171NAC domain-containing protein 19
4dul_B1e-501217615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-143LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-143LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152126.11e-177PREDICTED: NAC transcription factor 25
SwissprotQ9FY934e-88NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0KTV61e-176A0A0A0KTV6_CUCSA; NAC domain-containing protein
STRINGXP_004152126.11e-176(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-90NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]