![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.094040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 16871.2 Da PI: 10.6712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.2e-13 | 2 | 46 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky Cucsa.094040.1 2 PWSEEEHRTFLIGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 46 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.827 | 1 | 51 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-6 | 1 | 49 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 2 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-15 | 2 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-9 | 2 | 47 | No hit | No description |
TIGRFAMs | TIGR01557 | 3.1E-16 | 2 | 50 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 2 | 46 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
KPWSEEEHRT FLIGLKKLGK GDWRGISKNF VTTRTPTQVA SHAQKYFLRK MNANDKKKRR 60 ASLFDIPEIK NNFSRDCPAS GELPSQILLP KNNSPDNQSQ VNNLGTQLIN RFPHLCLDTP 120 HFIPQQTNGS SSPSSIPFVV INNSLFLNL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 55 | 59 | KKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 4e-99 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 4e-99 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146936.2 | 2e-99 | PREDICTED: myb-like protein I | ||||
Swissprot | Q9FKF9 | 3e-33 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A0A0KXN0 | 4e-98 | A0A0A0KXN0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166642.1 | 1e-100 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13874 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-35 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.094040.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|