PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.090320.2

Common Name

Csa_2G035330, LOC101216738

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 685aa MW: 73275.7 Da PI: 6.4727

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.090320.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.8	3.1e-16	454	500	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Cucsa.090320.2 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 500 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.28E-17	446	504	No hit	No description
SuperFamily	SSF47459	1.31E-20	447	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-20	447	508	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.349	450	499	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-13	454	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-17	456	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MVASDLSMNP ENDVFELVWE NGQILLQGQS NRPRKNSNLN TSQAQCLPSH SPRDRDRDVG 60 YFNNAKMGKF GAIDSVVRDV MSTAPSPDVE LAHDDDDDMV PWLSYPLDGH LQHDYSSDFL 120 PELSGVTVND FPSRNSIASS IGKASGGNQV NRERDMHLNS MHGANLEDGN ISKLSSLDVS 180 AARARSSTNQ LHSSASQQSQ TSFPHLRTKC AGETENTTGK MLHDSLVGHS PQVPLIASSS 240 SSIAKQKLDP TPPNNSSNII NFSHFLRPAS LLKSNPQKHG VPGTGGSRNL DSMVNNSSAA 300 NSQPHESSLI AIQGGIRNES NSGCKNAVVP TIDGKSPSDA KPLEQSQTNK QPEAACLGDS 360 ADHDDRLKHR FEVGATKGLA DSEKAVESVF AASLCSRNSV EGASDDPPHN RKRKCHDTED 420 SEWHSDDVEE DCNDVKRVTS ARGAGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC 480 NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLFMPPMMFP GAMAPMNTPH IYPPMGIGMG 540 YGIGMPDMNG GIPMVQVPHM QGMHFPGPSM PAQTVMHGLP SSNFQVLGLP GQGLPMPMPR 600 GPVAPFSGGP FVTNSSMAVA PVDNFGSTAA CSSKDASPNI NSPMGPNGGT DPSITPALRQ 660 ANEQASCVNA SSVKPTSKKD LIAN*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MVASDLSMNP ENDVFELVWE NGQILLQGQS NRPRKNSNLN TSQAQCLPSH SPRDRDRDVG  60
YFNNAKMGKF GAIDSVVRDV MSTAPSPDVE LAHDDDDDMV PWLSYPLDGH LQHDYSSDFL  120
PELSGVTVND FPSRNSIASS IGKASGGNQV NRERDMHLNS MHGANLEDGN ISKLSSLDVS  180
AARARSSTNQ LHSSASQQSQ TSFPHLRTKC AGETENTTGK MLHDSLVGHS PQVPLIASSS  240
SSIAKQKLDP TPPNNSSNII NFSHFLRPAS LLKSNPQKHG VPGTGGSRNL DSMVNNSSAA  300
NSQPHESSLI AIQGGIRNES NSGCKNAVVP TIDGKSPSDA KPLEQSQTNK QPEAACLGDS  360
ADHDDRLKHR FEVGATKGLA DSEKAVESVF AASLCSRNSV EGASDDPPHN RKRKCHDTED  420
SEWHSDDVEE DCNDVKRVTS ARGAGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLFMPPMMFP GAMAPMNTPH IYPPMGIGMG  540
YGIGMPDMNG GIPMVQVPHM QGMHFPGPSM PAQTVMHGLP SSNFQVLGLP GQGLPMPMPR  600
GPVAPFSGGP FVTNSSMAVA PVDNFGSTAA CSSKDASPNI NSPMGPNGGT DPSITPALRQ  660
ANEQASCVNA SSVKPTSKKD LIAN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	458	463	ERRRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648884.1	0.0	PREDICTED: transcription factor PIF3 isoform X1
Refseq	XP_011648885.1	0.0	PREDICTED: transcription factor PIF3 isoform X1
TrEMBL	A0A0A0LH16	0.0	A0A0A0LH16_CUCSA; Uncharacterized protein
STRING	XP_004168508.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-36	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Cucsa.090320.2
Entrez Gene	101216738

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]