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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.089670.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
MYB_related |
Protein Properties |
Length: 211aa MW: 23686.7 Da PI: 9.3748 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.089670.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 23 | 65 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++
Cucsa.089670.1 23 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 65
569******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
LKRCGKSCRL RWLNYLRPNI KHGGFSEEED NIICSLFISI GSRWSIIAAQ LPGRTDNDIK 60 NYWNTRLKKK LLGTPKQYFS NINKLSSHGN YRDTAQALTN SGIERLQLQM QLHQSTFSFN 120 NASTLWPPMS MKSPTVSSSS TELGRLEGGG GRGGVEFVKG MDGSKESLYW WGYDFDAKSG 180 GATKLWETAA SVDVQLEEIF KEFEQFSHSL *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |