PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.089490.1
Common NameCsa_2G057080, LOC101217538
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 320aa    MW: 35157.6 Da    PI: 7.9801
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.089490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87e-061648336
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    ++ C  +++  + lfC+ +  +lC  C  ++H  
  Cucsa.089490.1 16 KPLCCSCKSATAALFCRHDTAFLCLRCDAQIH-T 48
                    789****************************9.3 PP
2zf-B_box26.41.5e-085799339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     + C+ +e+ ++++ C+ +   lC++C   +H +       H++
  Cucsa.089490.1 57 VWLCEVCEQAPATITCNADAAALCPSCDADIH-SvnplarrHDR 99
                    689*****************************.33566666765 PP
3CCT69.21.1e-23244288145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae RpRvKGrFvk++e
  Cucsa.089490.1 244 REARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRNE 288
                     9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.5271459IPR000315B-box-type zinc finger
SMARTSM003360.21449IPR000315B-box-type zinc finger
CDDcd000219.12E-71759No hitNo description
PROSITE profilePS501199.37155102IPR000315B-box-type zinc finger
SMARTSM003366.8E-1155102IPR000315B-box-type zinc finger
PfamPF006439.8E-757100IPR000315B-box-type zinc finger
CDDcd000217.16E-55889No hitNo description
PROSITE profilePS5101716.479244286IPR010402CCT domain
PfamPF062039.0E-18244286IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHSFAAPWSG VPASTKPLCC SCKSATAALF CRHDTAFLCL RCDAQIHTLS GTRHPRVWLC  60
EVCEQAPATI TCNADAAALC PSCDADIHSV NPLARRHDRS AIQPFYDSPP SSSVASVFKF  120
LIPTQHQHDA VQPDLKSEDI FFSDMDSLID FDYPTAGDGV VPEQSNPGTE STTQLTDSST  180
RNFSGFQLCS TRSKLDAISY PSQNLSHSVS SSSLDVGVVP DRNTASDASF PTVEKAVQLR  240
GMEREARVLR YREKKKNRKF EKTIRYASRK AYAEIRPRVK GRFVKRNETN CEMERIYGSA  300
GVGFMVGEGQ YGVVPSLRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150328.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH83e-84COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0A0LK830.0A0A0A0LK83_CUCSA; Uncharacterized protein
STRINGXP_004164711.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2486733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-82CONSTANS-like 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]