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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.087900.1 |
| Common Name | Csa_2G405020, LOC101214064 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
GRAS |
| Protein Properties |
Length: 367aa MW: 40826 Da PI: 7.5453 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.087900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 448.4 | 4.6e-137 | 4 | 365 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
lv+lLl+cAeav+++d la+++L +l+ ++p gd+mqR+a++fteAL arla + +++k ++ + ++ns e l+++++ ++++P++kf+h
Cucsa.087900.1 4 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAA-TLTTSKPSSSIPPFPQNSLEILKIYQIVYQACPYVKFAH 97
68****************************************************9.55555555555555677********************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s ++++etg+ L+++A++l+vpfef++ + ++le+l+
Cucsa.087900.1 98 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----SIDAVRETGRCLTELAHSLNVPFEFHA-IGEQLESLK 187
******************************************************....9**************************.7******** PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
+++++ + gEalaVn v +lhr++ sl + +L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kv
Cucsa.087900.1 188 PNMFNRRVGEALAVNAVNRLHRVP--GKSLGN----LLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKV 276
***********************9..455555....*********************************************************** PP
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
E+ ++++ei+n+vaceg er+erhe+lekWr+ +e+ GFk v+ls++a++q k ll ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
Cucsa.087900.1 277 EQYIFAPEIRNIVACEGPERIERHERLEKWRKLMEAKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 365
****************************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
GLQLVHLLLA CAEAVAKEDY MLARRYLHHL NRVVTPIGDS MQRVASCFTE ALTARLAATL 60
TTSKPSSSIP PFPQNSLEIL KIYQIVYQAC PYVKFAHFTA NQAIFEAFEA EERVHVIDLD 120
ILQGYQWPAF MQALAARPGG SPFLRITGVG PSIDAVRETG RCLTELAHSL NVPFEFHAIG 180
EQLESLKPNM FNRRVGEALA VNAVNRLHRV PGKSLGNLLG MIRDQAPNIV TLVEQEASHN 240
GPYFLGRFLE ALHYYSAIFD SLDATFPPDS AQRAKVEQYI FAPEIRNIVA CEGPERIERH 300
ERLEKWRKLM EAKGFKGVAL SSNAVTQSKI LLGLYSCDGY RLTEDKGCLL LGWQDRALIA 360
ASAWRC*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Tang H, et al.
An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
BMC Genomics, 2014. 15: p. 312
[PMID:24767513] - Pecrix Y, et al.
Whole-genome landscape of Medicago truncatula symbiotic genes.
Nat Plants, 2018. 4(12): p. 1017-1025
[PMID:30397259]
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