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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.087750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25835.5 Da PI: 9.225 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 69 | 91 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Cucsa.087750.1 69 SCSVCPRVYPTSRLLSLHVSEaH 91 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.37 | 41 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3 | 68 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 106 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 108 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLTLMIFHFY LFCPILKVAL DLTEDEKLQL HNMAVDARSE IFCPIVGCGA HLKSLDDFED 60 HYNSRHTASC SVCPRVYPTS RLLSLHVSEA HDSFFQAKVA RGYDMYECLV EGCGLKFKSY 120 KSRHQHLVDK HKFSASFEFF KKAHPSKKQR QKTYRKQASQ GREETSKMEV ENEIMDGLIS 180 GVSKLSTSDS TPSSISFGRR HTRGLTFVPR AVQREKVSDS STAGTKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 152 | KKQRQKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 0.0 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138793.1 | 1e-154 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A0A0LMY3 | 1e-153 | A0A0A0LMY3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166425.1 | 1e-154 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 6e-79 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.087750.1 |