PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 454aa MW: 49597.6 Da PI: 6.1426

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.087530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.2	3.7e-28	169	223	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++ Cucsa.087530.1 169 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIECLTRHNVASHLQKYRSH 223 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.242	166	225	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-27	167	226	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-18	167	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-26	169	223	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-8	172	221	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0009658	Biological Process	chloroplast organization
GO:0009910	Biological Process	negative regulation of flower development
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MLALSPIRSG NKDEKQGEME RFSIGGDDFP DFDDDTNLLD SINFDDLFVG INDGDVLPDL 60 EMDPELLAEF SVSGGEESEV NASVSLEKFD DNTLIGNKDN DDDEDQKDFD FRSSSQVVDQ 120 EILSKREDEL ATPTNVIEVS PLVKDGGDKS IKPLKASSSQ SKNSQGKRKV KVDWTPELHR 180 RFVQAVEQLG VDKAVPSRIL ELMGIECLTR HNVASHLQKY RSHRKHLLAR EAEAASWSQR 240 RQMYGGGGGG GGGGKREVSP WGAPPTMGFP PMTPMHPHFR PLHVWGHPPA MDQSLLHVWP 300 KHLPHSPSPP PPPPTPPPSS WPHTAAPPPP PDSSYWHHHH HHQRVPNGLT SGTPCFPQPI 360 PTTRFGGASF SVIPPPHPMY KAAEPTTSIG RSPTHPPLDS YPSKESIDSA IGDVLAKPWL 420 PLPLGLKPPS LDSVKVELQR QGVPKIPPST CAA*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MLALSPIRSG NKDEKQGEME RFSIGGDDFP DFDDDTNLLD SINFDDLFVG INDGDVLPDL  60
EMDPELLAEF SVSGGEESEV NASVSLEKFD DNTLIGNKDN DDDEDQKDFD FRSSSQVVDQ  120
EILSKREDEL ATPTNVIEVS PLVKDGGDKS IKPLKASSSQ SKNSQGKRKV KVDWTPELHR  180
RFVQAVEQLG VDKAVPSRIL ELMGIECLTR HNVASHLQKY RSHRKHLLAR EAEAASWSQR  240
RQMYGGGGGG GGGGKREVSP WGAPPTMGFP PMTPMHPHFR PLHVWGHPPA MDQSLLHVWP  300
KHLPHSPSPP PPPPTPPPSS WPHTAAPPPP PDSSYWHHHH HHQRVPNGLT SGTPCFPQPI  360
PTTRFGGASF SVIPPPHPMY KAAEPTTSIG RSPTHPPLDS YPSKESIDSA IGDVLAKPWL  420
PLPLGLKPPS LDSVKVELQR QGVPKIPPST CAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-15	166	221	2	57	ARR10-B
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00022	PBM	Transfer from AT2G20570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681916	0.0	LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138790.1	0.0	PREDICTED: transcription activator GLK1-like
TrEMBL	A0A0A0LQW9	0.0	A0A0A0LQW9_CUCSA; Uncharacterized protein
STRING	XP_004158587.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4242	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-68	GBF's pro-rich region-interacting factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.087530.1
Entrez Gene	101212135

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]