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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.087460.1 |
Common Name | Csa_2G409480, LOC101211656 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C2H2 |
Protein Properties |
Length: 423aa MW: 46802.9 Da PI: 8.9975 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.087460.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.9 | 8.3e-06 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F r nL+ H r H
Cucsa.087460.1 57 FICEICGKGFQRDQNLQLHRRGH 79
89*******************88 PP
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2 | zf-C2H2 | 13.7 | 0.00019 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Cucsa.087460.1 133 WKCEKCSKRYAVQSDWKAHSKTC 155
58*****************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MIEKMADDEF SNCFLQIPLT GSNPSLLKKK RNLPGTPDPE AEVIALSPKT LLATNRFICE 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEAKKRVYVC PEKSCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAEETAR VKAGTTISNL NYNLMGGWRD HDETAGIFMT QHFGSSMKPV TMKMSSNSVQ 240 MIGGMMMNNS GGGMYGEDSV WGNQVQMGNY YYNENQGLMV NNGGRVCSLY SHEFQQVNET 300 QMGNMSATAL LQKAAEIGAT SSASSNTVTR SAAPSLSLLQ IQQQGFLFNN GSEFCNTNNN 360 PIVVVENNGS EMYTAKRRRS QSEFECGNGN GTTGTGTGET RDFLGVGAKT ICHASTSING 420 WI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]
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