PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087040.1
Common NameCsa_6G432270, LOC101207487
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 366aa    MW: 37662.4 Da    PI: 7.5226
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.23.1e-661423003153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                     s t++CqdCGnqakkdC+h+RCRtCC+srgfdCathvkstWvpaa+rrerq ++ +a++ a  s+ +++ +k++r      ++++s+t++s++++
  Cucsa.087040.1 142 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSaSTSGAKKPRL---IPSQTTSHTSTSNTTP 233
                     57899*********************************************88777665555443325555666665...4777788899999999 PP

          DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +++l+tss          lP +++++avf+cvrv++vddg++e+aY++ v+igGhvfkG+LydqG+e
  Cucsa.087040.1 234 PRSLDTSSshqdagnkeaLPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVE 300
                     999999999999*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-62144300IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.4E-26146188IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.5E-28252299IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MWSAAAQRSL NYGFGSEMGM VGLRDVYVVA PASSFNQNPQ QHDVNLLSDP HSLAVSNPAT  60
ALGVGVGVGV IPLLTAGPCL GVEEENFFGN RSNRGGGIQF QQSTQHYLKK TPSGSLDHVS  120
GTNNELIGGG IGGSGGLASS SSATTTCQDC GNQAKKDCSH RRCRTCCRSR GFDCATHVKS  180
TWVPAARRRE RQLMAVTATA AADGSSASTS GAKKPRLIPS QTTSHTSTSN TTPPRSLDTS  240
SSHQDAGNKE ALPGQIRAQA VFKCVRVTAV DDGDDEYAYH AMVKIGGHVF KGFLYDQGVE  300
AGDGFPNVSE LHLGDGGGGG GTMNNRNGSS SSPLVDPSDV YNTAGSGSGG VPGFLGGSNY  360
GNQIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657617.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK93e-94LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0A0KF010.0A0A0A0KF01_CUCSA; Uncharacterized protein
STRINGXP_004140281.10.0(Cucumis sativus)
STRINGXP_004156346.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.41e-61Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]