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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.086310.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22952.4 Da PI: 9.9746 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 47 | 92 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 E+ RRd++N++f eL ++l + + +K +K++iL Av+ I +L Cucsa.086310.2 47 ARKEKIRRDKLNDRFLELNSILNHG---RPPKIDKSAILGDAVRMIIQL 92 568*********************8...89****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.395 | 41 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.09E-7 | 44 | 97 | No hit | No description |
Pfam | PF00010 | 3.4E-8 | 46 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-6 | 47 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 48 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-11 | 49 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MFCFSLSMLM RLREDFDEPL GMEEDVKESR SRKRMSSGSS NAFESKARKE KIRRDKLNDR 60 FLELNSILNH GRPPKIDKSA ILGDAVRMII QLRDEAQKLK ESNESSLEKI NEMKAEKNEL 120 RDEKQRLKEA KDSLEKKMKG FNTQPTFLPH PPAIPAGFSS PNQIVGGKLV PVIGYPGVSM 180 WQFMPPGAID TSQDHVLRPP VA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 54 | RKEKIRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-136 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-136 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145091.1 | 1e-135 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-72 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0A0LX71 | 1e-134 | A0A0A0LX71_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145091.1 | 1e-135 | (Cucumis sativus) | ||||
STRING | XP_004154169.1 | 1e-135 | (Cucumis sativus) | ||||
STRING | XP_004167401.1 | 1e-135 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.086310.2 |