PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.081320.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 161aa    MW: 18654.7 Da    PI: 8.2803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.081320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.3e-2171322128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+ F Pt+eel+ +yL +kv g +++   v++ +d+y+ eP+++  ++   +++++yfF++ +kk+++  rk    + g+W+   k ++v+s+
  Cucsa.081320.1   7 PVGYIFCPTEEELLGYYLYNKVLGGQTPP-LVLPVIDLYTQEPSQIWqQCRGVDNQDIYFFTTLQKKKSRIIRKIG-SNGGTWSGENKPQQVFSS 99 
                     89**********************99887.68**************724444577799*******99876655555.578**************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ l g+ k + + k + +  e ++W+m ey+l
  Cucsa.081320.1 100 iiDNLLLGTMKRFRYEKSQVK--EDCTWIMYEYTL 132
                     988889********9854444..59********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-275154IPR003441NAC domain
PROSITE profilePS5100528.4016154IPR003441NAC domain
PfamPF023653.1E-167132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDPSLIPVGY IFCPTEEELL GYYLYNKVLG GQTPPLVLPV IDLYTQEPSQ IWQQCRGVDN  60
QDIYFFTTLQ KKKSRIIRKI GSNGGTWSGE NKPQQVFSSI IDNLLLGTMK RFRYEKSQVK  120
EDCTWIMYEY TLNPSIVPEG LVHDSYVLCM IRKKIVKSEK M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818418e-33LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132588e-33LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660358.11e-110PREDICTED: uncharacterized protein LOC105436381
TrEMBLA0A1S3B8F17e-78A0A1S3B8F1_CUCME; NAC domain-containing protein 105-like
STRINGXP_004146370.11e-116(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-15NAC domain containing protein 90