PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.078700.1 | ||||||||
Common Name | Csa_7G333400, LOC101206441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 533aa MW: 58767.6 Da PI: 6.4416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.8e-16 | 320 | 366 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+k Lq Cucsa.078700.1 320 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 366 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-21 | 314 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.165 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.65E-17 | 319 | 370 | No hit | No description |
Pfam | PF00010 | 9.4E-14 | 320 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-21 | 320 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-18 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSLPDDD VMELLWQNGQ VVTHSQNQRS 60 FRKSPPSKFD VSIPQEQAAT REIRPSTQLE EHHELFMQED EMASWLNYPL VEDHNFCSDL 120 LFPAITAPLC ANPQPDIRPS ATATLTLTPR PPIPPCRRPE VQTSVQFSRN KATVESEPSN 180 SKVMVRESTV VDSCDTPSVG PESRASEMAR RKLVEVVNGG GVRYEIARGS DGVRGASVGG 240 DGIGEKEMMT CEMTVTSSPG GSSASAEPAC PKLAVDDRKR KGRALDDTEC QSEDVEYESA 300 DPKKQLRGST STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE 360 YLKTLQLQVQ MMSMGCGMMP MMFPGVQQYL PPPMGMGMGM GMEMGMNRPM MQFHNLLAGS 420 NLPMQAGATA AAHLGPRFPL PPFAMPPVPG NDPSRAQAMN NQPDPMANSV GTQNTTPPSV 480 LGFPDSYQQF LSSTQMQFHM TQALQNQHPV QLNTSRPCTS RGPENRDNHQ SG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 329 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681793 | 0.0 | LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011659164.1 | 0.0 | PREDICTED: transcription factor PIF1 | ||||
Refseq | XP_011659165.1 | 0.0 | PREDICTED: transcription factor PIF1 | ||||
TrEMBL | A0A0A0K531 | 0.0 | A0A0A0K531_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139727.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-70 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.078700.1 |
Entrez Gene | 101206441 |
Publications ? help Back to Top | |||
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