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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.078000.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25335 Da PI: 10.3047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 109 | 149 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +GV++ k+ +W A I++ +k+++lg+fg+ eeAa ++++a+ Cucsa.078000.4 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFGSQEEAAHLYDRAA 149 79**98..47*********4.....5********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.124 | 91 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-10 | 107 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-7 | 109 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-8 | 110 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGKSSFV APLPKFSDHE TATENPSPSN ILITLHPKSS DDVNIKDRSS 60 IVNMESSFRN ALEWTSLNEQ SNQPISGHPL KHRKRHRRKN SHNQELSIMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTFGSQEE AAHLYDRAAF VCGREPNFEL SEEEKQELQK FKWEDFLAMT 180 RHAITNKSSQ LLLSKASVIV FSYIRFSSLL VVMCFRAQET * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681802 | 6e-99 | LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046. | |||
GenBank | LN713255 | 6e-99 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149780.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011659197.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 3e-43 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0A0K8E3 | 1e-129 | A0A0A0K8E3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149780.1 | 1e-130 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 5e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.078000.4 |