PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 232aa MW: 26473 Da PI: 10.3642

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.078000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.4	1.6e-12	109	149	3	50
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +GV++ k+ +W A I++ +k+++lg+fg+ eeAa ++++a+ Cucsa.078000.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFGSQEEAAHLYDRAA 149 7998..47*****4.....5******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	9.124	91	163	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-10	107	153	IPR016177	DNA-binding domain
SMART	SM00380	1.0E-4	108	165	IPR001471	AP2/ERF domain
Pfam	PF00847	5.9E-7	109	150	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.8E-8	110	153	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVSLRRRRLL GLCSGKSSFV APLPKFSDHE TATENPSPSN ILITLHPKSS DDVNIKDRSS 60 IVNMESSFRN ALEWTSLNEQ SNQPISGHPL KHRKRHRRKN SHNQELSIMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTFGSQEE AAHLYDRAAF VCGREPNFEL SEEEKQELQK FKWEDFLAMT 180 RHAITNKKHK RLSVSAGSSP KKLGASSLQI DNTELKHRFN EAPLPEDINF T*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681802	6e-90	LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBank	LN713255	6e-90	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149780.1	1e-172	PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
Refseq	XP_011659197.1	1e-172	PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
Swissprot	Q56XP9	2e-44	ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBL	A0A0A0K8E3	1e-171	A0A0A0K8E3_CUCSA; Uncharacterized protein
STRING	XP_004149780.1	1e-172	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5457	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13040.1	3e-37	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.078000.1
Entrez Gene	101210954

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]