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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.077940.1 | ||||||||
Common Name | Csa_7G353010, LOC105436151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 151aa MW: 17393.8 Da PI: 8.4687 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.1 | 3.9e-11 | 1 | 29 | 100 | 128 |
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g++ktLvfy++rap g kt+W+mhe+r+ Cucsa.077940.1 1 MGMRKTLVFYRNRAPYGIKTSWIMHEFRI 29 59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.595 | 1 | 48 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-16 | 1 | 48 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-4 | 2 | 29 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGMRKTLVFY RNRAPYGIKT SWIMHEFRIQ NPRFPPKEDW VLCKVFHKSR CNNETTMDIT 60 EINRVSKTVP LASASSSLCS PSSYIQFTPA VDTNKLPWKN NIISNNVEEV GGGFKLNGVD 120 HREYSTIQQM KFEIEDSIQN DFIPFDYFTA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681802 | 7e-67 | LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046. | |||
GenBank | LN713255 | 7e-67 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011659202.1 | 1e-109 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A0A0K6U0 | 1e-107 | A0A0A0K6U0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154466.1 | 1e-108 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-24 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.077940.1 |
Entrez Gene | 105436151 |
Publications ? help Back to Top | |||
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