PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.077390.2 | ||||||||
Common Name | Csa_6G355380, LOC101209131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37817.7 Da PI: 7.286 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.8e-50 | 36 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rFhPtdeel+ +yL+ kv + + ++l v i+evd++++ePw+Lp ++k +ekewyfFs r +ky+tg r+nrat +gyWkatgkd++++ Cucsa.077390.2 36 LPPGYRFHPTDEELIAFYLASKVFKPSnFDL-GVnIAEVDLNRCEPWELP-EAKMGEKEWYFFSLRVRKYPTGLRTNRATVAGYWKATGKDRQIH 128 79********************988874666.555***************.566799************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +g + g+kktLvfykg ap+g kt+Wvmheyrl Cucsa.077390.2 129 SScNGVKLGTKKTLVFYKGGAPRGIKTKWVMHEYRL 164 *989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-57 | 33 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 36 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 37 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MFGIEEVIGE LNREDDHEEK SGSGKEFIIK KHHRLLPPGY RFHPTDEELI AFYLASKVFK 60 PSNFDLGVNI AEVDLNRCEP WELPEAKMGE KEWYFFSLRV RKYPTGLRTN RATVAGYWKA 120 TGKDRQIHSS CNGVKLGTKK TLVFYKGGAP RGIKTKWVMH EYRLHSDLAS PNVCKDEWVL 180 CRIIHKSGEK IKPKSSFQET VPSPISLPSL LLNATQSINH INIQSQPPLH NIQHHENGLE 240 SFIINNPHFI FQPNLFPFGL NNHDPHLTTP PPPPPSIQMT DTNYHPHFNP SLLLDGGCDS 300 QQASSFGVDS GGTLVDVAAY RGARGDQSDE NWSGGC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 36 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 36 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 36 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 36 | 186 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 36 | 186 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 36 | 186 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 36 | 186 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681822 | 0.0 | LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657331.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X3 | ||||
Swissprot | Q9S851 | 2e-76 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0A0KFF1 | 0.0 | A0A0A0KFF1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170964.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 9e-79 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.077390.2 |
Entrez Gene | 101209131 |