PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.076390.1 | ||||||||
Common Name | Csa_5G583350, LOC101209714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YC | ||||||||
Protein Properties | Length: 284aa MW: 31664 Da PI: 4.9628 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.9 | 2.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r Cucsa.076390.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVGR 86 5789**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.8E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.64E-20 | 4 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYSVFDFL RDIVGRVPDY GHGHSDGAVD DRKRRKPLGD EGNDFDELKK 120 SKMHDMSHVS TGRGRGRGRG RGRGRPARSA ERDNYQPNPD VDPCTSIENR NKNPNPDVHM 180 EHHVEPSDTP KEVSEANQAI QNFDLNADVS TNEDSKTVPA AAVSDAPIEP AAPTTTTESE 240 TKAADEFPAW PLSDVDKMAI DPLQYTHLSS RVDEEEEDYD EEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 143 | RGRGRGRGRG |
2 | 134 | 144 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147086.1 | 0.0 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A0A0KPQ2 | 0.0 | A0A0A0KPQ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147086.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004165516.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-71 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.076390.1 |
Entrez Gene | 101209714 |
Publications ? help Back to Top | |||
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