PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.074610.1
Common NameCsa_3G101810, LOC101202813
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 297aa    MW: 33201.3 Da    PI: 7.491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.074610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42.1e-5191341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeel+v+yL++kv+g++++l + i+e+d+yk++Pw Lp k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + s 
  Cucsa.074610.1   9 LPPGFRFFPTDEELLVQYLCRKVAGHHFSL-QLIAEIDLYKFDPWVLPGKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISS- 101
                     79***************************9.89***************8777899*********************************999998. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Cucsa.074610.1 102 EGKNVGIKKALVFYVGKAPKGTKTNWIMHEYRL 134
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-665158IPR003441NAC domain
PROSITE profilePS5100559.9459157IPR003441NAC domain
PfamPF023658.8E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDPLTQLSLP PGFRFFPTDE ELLVQYLCRK VAGHHFSLQL IAEIDLYKFD PWVLPGKALF  60
GEKEWYFFSP RDRKYPNGSR PNRVAGSGYW KATGTDKIIS SEGKNVGIKK ALVFYVGKAP  120
KGTKTNWIMH EYRLITSSRK TGSSKLDDWV LCRIYKKNSS CQKPTGSISS KEYSNASPSS  180
SIDEVIESLP ETGDDFFAYP KTTLQQNDIM NRFNFEIPAD SVHSDWASLA GLYSVPELGP  240
VDHSGTFDFN NNNNTIADLY VPSVTSPFCQ VDYPPASAFR YSTQQRDGGG VFGFSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-107216310171NO APICAL MERISTEM PROTEIN
1ut4_B1e-107216310171NO APICAL MERISTEM PROTEIN
1ut7_A1e-107216310171NO APICAL MERISTEM PROTEIN
1ut7_B1e-107216310171NO APICAL MERISTEM PROTEIN
3swm_A1e-107216313174NAC domain-containing protein 19
3swm_B1e-107216313174NAC domain-containing protein 19
3swm_C1e-107216313174NAC domain-containing protein 19
3swm_D1e-107216313174NAC domain-containing protein 19
3swp_A1e-107216313174NAC domain-containing protein 19
3swp_B1e-107216313174NAC domain-containing protein 19
3swp_C1e-107216313174NAC domain-containing protein 19
3swp_D1e-107216313174NAC domain-containing protein 19
4dul_A1e-107216310171NAC domain-containing protein 19
4dul_B1e-107216310171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00012PBMTransfer from AT1G52890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133700.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-118JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A0A0L6K60.0A0A0A0L6K6_CUCSA; Uncharacterized protein
STRINGXP_004171487.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-115NAC family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  5. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  6. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]