PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.072940.1 | ||||||||
Common Name | Csa_2G423590, LOC101212433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26862.6 Da PI: 7.35 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 79 | 128 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ rE++RRd++N++f eL +l + + +K +K++iL A++ + +Lq Cucsa.072940.1 79 TSKACREKQRRDKLNERFLELAAVLEPG---KPPKSDKVAILSDAIRMMTDLQ 128 67889**********************9...99***************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.97 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-13 | 79 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-9 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-8 | 79 | 132 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-13 | 81 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-9 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDNPPPNWNW LFDYSTVDDL AVVDPRFSPP QSISFSWSNP SINFLSKDSL EVDCSYEDLD 60 STKEVGRKRL RGETSAASTS KACREKQRRD KLNERFLELA AVLEPGKPPK SDKVAILSDA 120 IRMMTDLQCE TQKLRESKED LKAKIKELKV EKNELRDEKQ RLRAEKEKLE LQIRAVNTRA 180 ADVQHPPPTL SAAFTAQGQS AGNKLMPFIG YPGIAMWQFL PPAAVDISQD HVLRPPVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | GRKRLRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 1e-136 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 1e-136 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151873.1 | 1e-176 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-81 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0A0LQH8 | 1e-174 | A0A0A0LQH8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004151873.1 | 1e-175 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.072940.1 |
Entrez Gene | 101212433 |