PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 140aa MW: 15126.1 Da PI: 10.3915

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.069460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.9	3.3e-19	29	63	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Cucsa.069460.1 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 63 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	8.0E-13	23	81	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.545	23	59	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-13	25	62	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-15	27	63	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.44E-13	28	63	No hit	No description
PROSITE pattern	PS00344	0	29	54	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.1E-17	29	63	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MMDPIEEGSE FKDAGKTSPM ESEQNKKTCA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK 60 KRRSLLGLNR GGEVERKNKG SSNNRNNNGG GNQGKIGGES LKWRSMAFGR KELMQRRQLG 120 EEEQAAVLLM ALSYGSVYA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	1e-137	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	1e-137	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150081.1	3e-97	PREDICTED: GATA transcription factor 16-like
Swissprot	Q8LG10	8e-37	GAT15_ARATH; GATA transcription factor 15
Swissprot	Q9FJ10	6e-37	GAT16_ARATH; GATA transcription factor 16
TrEMBL	A0A0A0KG76	7e-96	A0A0A0KG76_CUCSA; Uncharacterized protein
STRING	XP_004161386.1	1e-96	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1569	32	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	6e-28	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Cucsa.069460.1
Entrez Gene	101209646

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]