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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.065930.1 | ||||||||
Common Name | Csa_4G293330, LOC101218378 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17897.7 Da PI: 9.4242 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Cucsa.065930.1 42 FECKTCNRQFPSFQALGGHRASH 64 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.2e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ Fs+ L H+r+H Cucsa.065930.1 85 HECGLCGQEFSSGQALGGHMRRH 107 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.8E-13 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.41E-9 | 41 | 107 | No hit | No description |
SMART | SM00355 | 0.16 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.6E-10 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAAKRIREQF EASDIAKSLT LLSYGIQESS DLKFQPQNAA VFECKTCNRQ FPSFQALGGH 60 RASHKRPRTS VEEPKDTADL KQKIHECGLC GQEFSSGQAL GGHMRRHRVP PLAVAVAEKI 120 PVLKRSGSTR VMCLDLDLNL TPLENDLKLL FGKMAPAVNL VL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681888 | 0.0 | LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142087.1 | 1e-117 | PREDICTED: zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 3e-42 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A0A0KXE6 | 1e-116 | A0A0A0KXE6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161684.1 | 1e-117 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.065930.1 |
Entrez Gene | 101218378 |
Publications ? help Back to Top | |||
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