PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 416aa MW: 47200.9 Da PI: 7.1585

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.065480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.1	4.2e-22	94	188	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ ++g kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ d++ Cucsa.065480.1 94 KWTDEIVRLLIAVVACVGDDGEAGMgskrksgilHKKGKWKTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLNDILGKGtSCRVVENPALMDSM 188 7************88888887533456678889*******************************************669999999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-19	92	215	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMNNFE GKAIASGCIT 60 NNYTSEEDEP SYTEDGECSE FLKGKKGSPW QRMKWTDEIV RLLIAVVACV GDDGEAGMGS 120 KRKSGILHKK GKWKTVSKIM QSKGCHVSPQ QCEDKFNDLN KRYKRLNDIL GKGTSCRVVE 180 NPALMDSMPH LSSKAKDDVR KILSSKHLFY KEMCAYHNGQ TIPGCQDVDF QGKILPVANF 240 SKGNNESEDS DSDSDSGESD NEDDHSPVEN RLWSSESRGR DKVSADDGPL WSNSVGKNEF 300 EGQIDVFLSD PTKSHWERKV WIKKQMLQLQ EQCNSFQAQS VELEKQRFKW LRYCSKKNRD 360 LERARLENER MKLDNEQRVL QLKRKEMELE LKRSDLAVGP LLAIDRIQGR EQLDLX

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMNNFE GKAIASGCIT  60
NNYTSEEDEP SYTEDGECSE FLKGKKGSPW QRMKWTDEIV RLLIAVVACV GDDGEAGMGS  120
KRKSGILHKK GKWKTVSKIM QSKGCHVSPQ QCEDKFNDLN KRYKRLNDIL GKGTSCRVVE  180
NPALMDSMPH LSSKAKDDVR KILSSKHLFY KEMCAYHNGQ TIPGCQDVDF QGKILPVANF  240
SKGNNESEDS DSDSDSGESD NEDDHSPVEN RLWSSESRGR DKVSADDGPL WSNSVGKNEF  300
EGQIDVFLSD PTKSHWERKV WIKKQMLQLQ EQCNSFQAQS VELEKQRFKW LRYCSKKNRD  360
LERARLENER MKLDNEQRVL QLKRKEMELE LKRSDLAVGP LLAIDRIQGR EQLDLX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142119.1	0.0	PREDICTED: uncharacterized protein LOC101205501
TrEMBL	A0A0A0KX12	0.0	A0A0A0KX12_CUCSA; Uncharacterized protein
STRING	XP_004161693.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-84	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.065480.1
Entrez Gene	101205501

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]