PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.062320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 79aa MW: 8660.31 Da PI: 9.8477 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.5 | 4.4e-14 | 31 | 74 | 3 | 46 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 aaCk++r +C+k+Cvla yfp ++ kf ++h +F+asn++kll Cucsa.062320.1 31 AACKIHRWRCTKKCVLAAYFPPSELLKFTIAHCIFSASNIIKLL 74 8*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.328 | 28 | 78 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-12 | 31 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
FDFNSSPFSI VIASPSPSPT IQAFVVLSSY AACKIHRWRC TKKCVLAAYF PPSELLKFTI 60 AHCIFSASNI IKLLLVRP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147299.1 | 2e-19 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-15 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1S3CK12 | 3e-17 | A0A1S3CK12_CUCME; LOB domain-containing protein 1-like | ||||
STRING | XP_004147299.1 | 6e-19 | (Cucumis sativus) | ||||
STRING | XP_004161319.1 | 6e-19 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-17 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.062320.1 |