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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.058780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 20044.7 Da PI: 9.3086 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.7 | 5.3e-41 | 15 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeel k++ + e+ik++diyk++PwdLpk + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+ Cucsa.058780.1 15 LPGFRFHPTDEELK----------KPIAI-EIIKQIDIYKYDPWDLPKVSNVGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSTl 98 69**********96..........78888.88***************888889****************************************98 PP NAM 96 .........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Cucsa.058780.1 99 klssndhnaNANIIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 140 8888776655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.125 | 1 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-46 | 13 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-19 | 16 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAIVVDQEDD DQVILPGFRF HPTDEELKKP IAIEIIKQID IYKYDPWDLP KVSNVGDKEW 60 YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPIFSTLKL SSNDHNANAN IIGLKKSLVY 120 YRGSAGKGTK TDWMMHEFRL PFNNNNIIPH QHDHNNAVSL SLNSLFPTND HNNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-41 | 1 | 140 | 1 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681865 | 1e-159 | LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599. | |||
GenBank | LN713261 | 1e-159 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144678.1 | 1e-110 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 3e-69 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0A0L479 | 1e-109 | A0A0A0L479_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144678.1 | 1e-110 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-69 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.058780.1 |