PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.053270.1
Common NameCsa_3G405510, LOC101216606
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 595aa    MW: 66028.3 Da    PI: 5.9075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.053270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.21.7e-1282245931373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s++ ++  ++l+a+ +  +s  g+p+qRl ay++e+L ar  +s+ ++y+al+++e +   s++ l+++++++e++P+lkf++
  Cucsa.053270.1 224 LKDLLIACAKALSDNRMKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA---SDDLLSYMHMLYEICPYLKFGY 315
                     5789*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +++rLa++  + g+p+ef+  +      
  Cucsa.053270.1 316 MAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEVVERRLAEISIKYGIPVEFHG-MPVFAPH 409
                     *******************************************************999999**************************.6888899 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++F++rfle+l+yy a+f+s++++lpr++++ri
  Cucsa.053270.1 410 ITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFLETLDYYLAIFESIDVTLPRNNKKRI 504
                     99********************************************************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+++ivnv+aceg++r+erhe ++kW++rl++aGF++ pls+++++ +++ll+ ++ d y+++e++g+++lgWk+r+L+s+SaW
  Cucsa.053270.1 505 NVEQHCLAKDIVNVIACEGRDREERHELFGKWKSRLTMAGFRQSPLSSYVNSVIRSLLKYYS-DHYTLDEKDGAMLLGWKNRNLISASAW 593
                     **********************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.566198575IPR005202Transcription factor GRAS
PfamPF035146.0E-126224593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDSHQLFGFG VNSAAGLSFT PSCSSVPSLP NTLLGPLKFN LSNSPALSPL FSSHFEFDSF  60
TTTTVSDSPD QRNSPDNLSG LSPSCNSSFE TSSFNQIASS YLDTFEDESR QLYSRSNAFV  120
YDGCSTENIS YTLKQLESVL MGPDNEEVVN KPDVSFGVSG RPQMMGPRSY SWSQDRHGGS  180
YGVQSQASPV SRSQKSEAVH LGKRQKSMDE SLLQQQGGLP SDNLKDLLIA CAKALSDNRM  240
KDFDNLVATA RGAVSIGGEP IQRLGAYMVE GLVARKEESG ANIYRALNCR EPASDDLLSY  300
MHMLYEICPY LKFGYMAANG AIAEACRNED RIHIIDFQIT QGTQWLTLLQ ALAARPSGAP  360
HVRITGIDDP VSKYARGDGL EVVERRLAEI SIKYGIPVEF HGMPVFAPHI TRDMLDIRPG  420
EALAVNFPLQ LHHTPDESVD VNNPRDGLLR MVKSLSPKVV TLVEQESNTN TTPFFNRFLE  480
TLDYYLAIFE SIDVTLPRNN KKRINVEQHC LAKDIVNVIA CEGRDREERH ELFGKWKSRL  540
TMAGFRQSPL SSYVNSVIRS LLKYYSDHYT LDEKDGAMLL GWKNRNLISA SAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-592285938374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151967.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0A0LD170.0A0A0A0LD17_CUCSA; Uncharacterized protein
STRINGXP_004160267.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-161GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]