|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.052720.1 |
Common Name | Csa_6G290790, LOC101215067 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
Family |
LBD |
Protein Properties |
Length: 201aa MW: 21715.5 Da PI: 6.0909 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.052720.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 135.9 | 1.5e-42 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca+ Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+a+la
Cucsa.052720.1 37 PCAACKILRRRCAERCVLAPYFPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQKQVNELQAQLA 131
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
Cucsa.052720.1 132 KAQAE 136
*9976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MEGSDTITVT TVSSTPLSQS PSSSSSPAPP PPVILSPCAA CKILRRRCAE RCVLAPYFPP 60 SEPAKFAIAH RVFGASNIIK FLQELPESQR ADAVSSLVYE ASARVRDPVY GSAGAICQLQ 120 KQVNELQAQL AKAQAEVVNM QCQQANLVAF VCRELAQSHQ SFDEFNGSPQ SHNGLLQSIH 180 PPSYFDDSNN VNSLWEPLWT *
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | LN681922 | 1e-168 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. |
GenBank | LN713265 | 1e-168 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |