PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050160.2
Common NameCsa_7G428890, LOC101202980
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 421aa    MW: 46563.5 Da    PI: 8.1125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050160.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13355400655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P      +k  s a++Le+AveYIk Lq
  Cucsa.050160.2 355 SIAERMRRTRISERIKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 400
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-14352413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-11353404No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13354410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10355400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP TSLFASLVDG  60
TEGFNSSNNG GGTREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVQ  120
QQNGFCNQPS SMVNTRSVDA GGRAPVGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS  180
PAGFFSHLIA ENGNTTREVD KFGTCNRKDV DAAYPSTRIG SQMNLSGHSF GSNHMPPIAE  240
EENKSIGIVG SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DTKRGRDNNG RAFATSIVLE  300
TQQNADSGNN IRGLAHHLSL PISFNKDPVE KFLRFQEPVP HQIRAKRGCA THPRSIAERM  360
RRTRISERIK KLQELFPDMD KQTSTADMLE LAVEYIKGLQ RQVKTLTDTK AKCTCSCSSQ  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659459.10.0PREDICTED: transcription factor bHLH130 isoform X1
RefseqXP_011659460.10.0PREDICTED: transcription factor bHLH130 isoform X1
TrEMBLA0A0A0K9U60.0A0A0A0K9U6_CUCSA; Uncharacterized protein
STRINGXP_004167982.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-54bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]