PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 36157 Da PI: 5.5855

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.050000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	166	220	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Cucsa.050000.1 166 RKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 220 778899***********************************************98 PP
2	HD-ZIP_I/II	127.9	4.3e-41	166	256	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Cucsa.050000.1 166 RKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 256 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	148	220	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.38E-18	159	223	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	162	222	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	164	226	IPR001356	Homeobox domain
CDD	cd00086	3.46E-16	166	223	No hit	No description
Pfam	PF00046	9.9E-16	166	220	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	197	220	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.5E-11	222	256	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.0E-24	222	265	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MELGLSLGDA PKPFRFVEKQ SQVPSPQRRL SRKDLGFCVD LSIGRSVAGD KEDDEDKPNQ 60 GEDESDGNED PPTQLDLLPH NPVPRNLTNP YQGFPWPSSE NDEGEDRTAS PNSAASSFQM 120 EFGLYGSGGN ISSRRDQMEN GVMNEVGESE RASSRASDED ENGCTRKKLR LSKEQSAFLE 180 ESFKEHNTLN PKQKQALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE 240 ENRRLQKELQ ELRALKTTNS LYMQLPATTL TMCPSCERVT SSSAASTVAA TEGVTKRSGL 300 AIGGGRPGSS SFPFSAKTQS HQSTAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	TRKKLRL
2	214	222	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	1e-172	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	1e-172	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135907.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11-like
Swissprot	P46665	7e-92	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0A0KBJ3	0.0	A0A0A0KBJ3_CUCSA; Uncharacterized protein
STRING	XP_004135907.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2335	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-85	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Cucsa.050000.1
Entrez Gene	101221600

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]