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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.048600.1 |
Common Name | Csa_6G526320 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LSD |
Protein Properties |
Length: 172aa MW: 17832.6 Da PI: 8.4422 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.048600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 39.9 | 7.1e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L YP GA++V+CalC+tV
Cucsa.048600.1 7 CSGCRSILLYPGGATNVCCALCNTV 31
************************9 PP
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2 | zf-LSD1 | 47.1 | 3.9e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y rGA+sVRC++C+tV
Cucsa.048600.1 46 CGGCRTLLMYARGATSVRCSCCHTV 70
************************9 PP
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3 | zf-LSD1 | 41.7 | 1.9e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L +P+GApsV+Ca+C+ V
Cucsa.048600.1 84 CGNCRTTLVFPYGAPSVKCAICHYV 108
**********************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000303 | Biological Process | response to superoxide |
GO:0001666 | Biological Process | response to hypoxia |
GO:0002240 | Biological Process | response to molecule of oomycetes origin |
GO:0009626 | Biological Process | plant-type hypersensitive response |
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
GO:0010618 | Biological Process | aerenchyma formation |
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MQSQLVCSGC RSILLYPGGA TNVCCALCNT VTSVPPPGTD MAQLICGGCR TLLMYARGAT 60 SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LVFPYGAPSV KCAICHYVTN VGISNVRVPI 120 PVHRRNGTIS SGMPPSSSSQ SQTVVVENPM SVDESGKLVS NVVVGVTTDK R*
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Functional Description ? help
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Source |
Description |
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana. Biochemistry, 2008. 47(17): p. 4936-47 [PMID:18393445] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties. Plant Cell Rep., 2016. 35(3): p. 527-39 [PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator. Plant Cell Environ., 2017. 40(11): p. 2644-2662 [PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana. Physiol Plant, 2019. 165(2): p. 369-382 [PMID:30461017]
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