PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.048520.1

Common Name

Csa_6G526230

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 516aa MW: 57516.6 Da PI: 6.5732

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.048520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.9e-31	260	318	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Cucsa.048520.1 260 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 318 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.96	254	320	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.4E-31	256	320	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-26	258	320	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	259	319	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	261	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MENYEEVGDL TDIVRGRSST TTTRSSTTTT TTTTSSSSNC KTEILADHHL QDSTSFYYSS 60 SSQLLQLQDH QHHQYNFGDP FCSVVAPSVL DHHLHQHHHQ LPVDNSTNIN AFFNGISASS 120 TTTTAAAAHQ DHEDHHEVMK SSPCNSNLFS RMLQISPSPN KFQTISSLTN NSPPPSNFLI 180 SNHSPTTTTT PLHPDHHLHH FLHHHDHNNN NNNNTSSALH ISSPRNPPGI KRRKSQARKV 240 VCVPAPVAAS SRPNGEVIPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS 300 RTDPNMLVIT YTSEHNHPWP TQRNALAGSS RSSQQSSKNN TSTITTTSTT TQPNSSKLVH 360 HKNKQEVQEE EEEQDHENNN DGTTMTLLSS TAAVDEEASN KNNNNVKEEE MIENELMMSS 420 TSEGGLIDED HDFFADLEEL ETDPLTLLFN TTTQQQQQQQ QHLQQPPHKL EQIIKGSAAA 480 ACLHDVVPFN HLFDWPPPPH QEQPPPSSPT NRGFY*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MENYEEVGDL TDIVRGRSST TTTRSSTTTT TTTTSSSSNC KTEILADHHL QDSTSFYYSS  60
SSQLLQLQDH QHHQYNFGDP FCSVVAPSVL DHHLHQHHHQ LPVDNSTNIN AFFNGISASS  120
TTTTAAAAHQ DHEDHHEVMK SSPCNSNLFS RMLQISPSPN KFQTISSLTN NSPPPSNFLI  180
SNHSPTTTTT PLHPDHHLHH FLHHHDHNNN NNNNTSSALH ISSPRNPPGI KRRKSQARKV  240
VCVPAPVAAS SRPNGEVIPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS  300
RTDPNMLVIT YTSEHNHPWP TQRNALAGSS RSSQQSSKNN TSTITTTSTT TQPNSSKLVH  360
HKNKQEVQEE EEEQDHENNN DGTTMTLLSS TAAVDEEASN KNNNNVKEEE MIENELMMSS  420
TSEGGLIDED HDFFADLEEL ETDPLTLLFN TTTQQQQQQQ QHLQQPPHKL EQIIKGSAAA  480
ACLHDVVPFN HLFDWPPPPH QEQPPPSSPT NRGFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-25	235	321	3	80	Disease resistance protein RRS1
5w3x_D	7e-25	235	321	3	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134891.2	0.0	PREDICTED: probable WRKY transcription factor 35
TrEMBL	A0A0A0KKY7	0.0	A0A0A0KKY7_CUCSA; Uncharacterized protein
STRING	XP_004134891.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24611	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-52	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Cucsa.048520.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]