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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.048040.1 |
Common Name | Csa_6G525240, LOC101213331 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 149aa MW: 16717.8 Da PI: 7.2428 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.048040.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 131.3 | 4.2e-41 | 15 | 115 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+Ca+Ck+lrrkC dC++apyfpa+qp+kf++vh+++Gasnv+k+lka + +ere++++slv+eAear++dPv+G+v++i lqq+l++l++ela
Cucsa.048040.1 15 PCASCKFLRRKCDVDCIFAPYFPADQPQKFEVVHRIYGASNVSKILKASRYDEREETVKSLVFEAEARLEDPVHGCVAFIAGLQQRLQRLQTELA 109
7********************************************************************************************** PP
DUF260 96 llkeel 101
++++l
Cucsa.048040.1 110 IVQQQL 115
***986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MSSSNSQSQK IYGSPCASCK FLRRKCDVDC IFAPYFPADQ PQKFEVVHRI YGASNVSKIL 60 KASRYDEREE TVKSLVFEAE ARLEDPVHGC VAFIAGLQQR LQRLQTELAI VQQQLLSYMA 120 SQLPPNSSYM ASELPPNSSY MASELPPNX
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Functional Description ? help
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Source |
Description |
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Kim M,Kim MJ,Pandey S,Kim J
Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] - Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]
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