PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.047000.1

Common Name

Csa_6G519620, LOC105435965

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 306aa MW: 35593.5 Da PI: 9.0409

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.047000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	72	125	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Cucsa.047000.1 72 PRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 125 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.825	68	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-30	68	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-15	70	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	72	127	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-10	73	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MPSRKWSLFD LNEEASVEDG DEMTIEEIEQ NEERKYENSS TNNNENNSDN NNNNNNNGRR 60 TAVRQYVRSK VPRLRWTPEL HLNFVHAVQR LGGQERATPK LVLQLMNVKG LSIAHVKSHL 120 QMYRSKKLDQ SGQVIREACD GIRMGLMHGG GRYYNSNSNG GSNMSMLLQQ TTHQYSRCYP 180 FTRHLHTQFG TLTTLLHSHS PYHPTPPFRQ VLEQKNRWST NLNMRRMNNN NNSNNNNNNG 240 SCELMRRRGN YNWEDQEGSD VEMKKKEKRL LMLDEKREEW NEAELELGLR HTTTTQQITT 300 ELSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-18	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-18	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-18	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-18	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-144	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-144	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658250.1	0.0	PREDICTED: myb-like protein H isoform X1
TrEMBL	A0A0A0KHW1	0.0	A0A0A0KHW1_CUCSA; Uncharacterized protein
STRING	XP_008439737.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.047000.1
Entrez Gene	105435965

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]