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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.046660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 30927.8 Da PI: 6.3173 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.6e-20 | 120 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g Cucsa.046660.1 120 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAALAYDKAALRIRG 170 8********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.99E-31 | 119 | 179 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-32 | 119 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-38 | 120 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 120 | 178 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 120 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAIQQDQSEA ILENVWANYI GEKGLDGNGA TKSVSGSNKT WTELPSLCYR DGSMEVLERL 60 PSLGRWVSMG AEAWEELLDG IVPINNTEQS VHEDLKNTPT SHSGFDVNTR RAEKVVPTKH 120 YRGVRRRPWG KYAAEIRDSS RKGARVWLGT FNTAEEAALA YDKAALRIRG PKAHLNFPIE 180 TVTEAMGIHL STRNDHLNNL MPSSFQGHDS SSHGDSSITG ALQSDSVLEV AKEMVLELLP 240 QGSTLGFLFD GGEVVVVFAA AAAATTSGGK LRRALEPLIV KAAVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 119 | 181 | 4 | 66 | ATERF1 |
3gcc_A | 1e-27 | 119 | 181 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134940.2 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A0A0KHS7 | 1e-162 | A0A0A0KHS7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004134940.1 | 1e-163 | (Cucumis sativus) | ||||
STRING | XP_004155636.1 | 1e-163 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.046660.1 |