PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.045680.2

Common Name

Csa_6G516730, LOC105435958

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 403aa MW: 43895.4 Da PI: 5.3342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.045680.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.8e-05	299	331	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L Cucsa.045680.2 299 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 331 55666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.19E-5	292	335	No hit	No description
SuperFamily	SSF47459	1.96E-9	292	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-7	296	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042631	Biological Process	cellular response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071472	Biological Process	cellular response to salt stress
GO:2000214	Biological Process	regulation of proline metabolic process
GO:2000377	Biological Process	regulation of reactive oxygen species metabolic process
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAEDFQAPVC GDNWWNSSRS MLVAVGGLSP CSVGIADLSW PPQPPSAATD SVNNNSSMLF 60 QDYSTFQMMG FALSSSTTSE HWNQSQDLLN SNGIPTNFSS ENGLKQGNDG DDYLNCSSTN 120 TTNCQGGLFP VESSLYGYSS PSTKLLQTNL YEDDNSDPHS LFNSTPSITT NSTTFPTNIN 180 PPNHLSLSST PSFSSNYLVK PSLPNPQPHL QFTNNTPFWN ASSSNSIPQG IASLLEDKNN 240 PKSQNNTLAF KSVNEDGQDQ VKKGDKNSAI TTEPTVFKRP RIETPSPLPT FKVRKEKLGD 300 RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKSNNGITPV QHQQVSEKAN 360 HDSPKQDLKS RGLCLVPISS TFPVTNATTT DFWTPTFGGT FR*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAEDFQAPVC GDNWWNSSRS MLVAVGGLSP CSVGIADLSW PPQPPSAATD SVNNNSSMLF  60
QDYSTFQMMG FALSSSTTSE HWNQSQDLLN SNGIPTNFSS ENGLKQGNDG DDYLNCSSTN  120
TTNCQGGLFP VESSLYGYSS PSTKLLQTNL YEDDNSDPHS LFNSTPSITT NSTTFPTNIN  180
PPNHLSLSST PSFSSNYLVK PSLPNPQPHL QFTNNTPFWN ASSSNSIPQG IASLLEDKNN  240
PKSQNNTLAF KSVNEDGQDQ VKKGDKNSAI TTEPTVFKRP RIETPSPLPT FKVRKEKLGD  300
RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKSNNGITPV QHQQVSEKAN  360
HDSPKQDLKS RGLCLVPISS TFPVTNATTT DFWTPTFGGT FR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658178.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBL	A0A0A0KHH2	0.0	A0A0A0KHH2_CUCSA; Uncharacterized protein
STRING	XP_008439935.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	3e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.045680.2
Entrez Gene	105435958

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]