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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.045360.1 | ||||||||
Common Name | Csa_6G514870, LOC101209093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 722aa MW: 79184.6 Da PI: 6.3178 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.2e-20 | 50 | 105 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++e+e++F+++++p+ ++r eL+++lgL+ qVk+WFqN+R+++k Cucsa.045360.1 50 KKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMK 105 577789***********************************************998 PP | |||||||
2 | START | 182.1 | 3.1e-57 | 238 | 459 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la + ++el ++a+ +ep+Wv +n+ e+l++f + v +++ea+r+s+vv+m++++lv +++d qW++ + +a+t Cucsa.045360.1 238 LAVSGMEELRRMAQGGEPLWVAGDgkssgeVVLNEAEYLRSFGGGIVgkpmgFRTEASRVSAVVFMNHMKLVDIFMDAT-QWSTVFCgivsRAST 331 5677799**************88766667777888888888855555********************************.******99999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 +e +s+g gal++m+ae+q++splvp R+ +fvRy++q+++g+w+++dvS+d ++ p ++ R pSg+li++++ng+sk+twveh Cucsa.045360.1 332 VEILSPGlpgnfnGALHVMSAEFQVPSPLVPtRENYFVRYCKQQTDGSWAVADVSLDTLRPSPI-PNTRR---KPSGCLIQELPNGYSKITWVEH 422 ***************************************************************5.66666...********************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v++++ ++ ++r lv+sgla+gak+wvatl+rq e+ Cucsa.045360.1 423 VEVDETGVPTMYRTLVNSGLAFGAKRWVATLDRQSER 459 *********************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 39 | 105 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 40 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 48 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.31E-19 | 49 | 108 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 50 | 105 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.569 | 228 | 462 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.16E-30 | 231 | 460 | No hit | No description |
CDD | cd08875 | 2.89E-111 | 232 | 458 | No hit | No description |
SMART | SM00234 | 4.3E-52 | 237 | 459 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-48 | 239 | 459 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.0E-7 | 327 | 456 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.3E-21 | 481 | 713 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MFDPDMFDTT HHHMLEELEN MREDDFDNKS GAEILESACG TDQQQQRSKK KRYNRHTQHQ 60 IQEMEAFFKE CPHPDDKQRM ELSRELGLEP LQVKFWFQNK RTQMKAQHER HENAILKAEN 120 EKLRAENIRY REAFAHSTCP NCGSSSTALG EMSFDDQHLR IENSRLRDEI ERMSGYGSKC 180 TKPYYQLPTN APTRSLDLGI TNFGPQSSGF VGEMYGAADF FRSISRPSEG EKPVIVELAV 240 SGMEELRRMA QGGEPLWVAG DGKSSGEVVL NEAEYLRSFG GGIVGKPMGF RTEASRVSAV 300 VFMNHMKLVD IFMDATQWST VFCGIVSRAS TVEILSPGLP GNFNGALHVM SAEFQVPSPL 360 VPTRENYFVR YCKQQTDGSW AVADVSLDTL RPSPIPNTRR KPSGCLIQEL PNGYSKITWV 420 EHVEVDETGV PTMYRTLVNS GLAFGAKRWV ATLDRQSERF ATSIATTIPT GDLRVISSIE 480 GRKSMLKLAE RMVTSFCAGV GASSVHAWTA LPAAAGDEVR VVTRKSTDEP GRPPGVVLSA 540 ATSFWIPVSP KVVFDFLRKE KSRSEWDILS NGGLVQEMAH IANGRHSGNC VSLLRVNSAN 600 SSQSNMLILQ ESCTDSTGSY VIYAPVDTVA MNVVLSGCDP DYVALLPSGF AILPDGPGGG 660 GNNGGGILEL GSGGSLITVA FQILVDSVPT ARLSIGSVAT VNSLIKCTVE RIRAAVMREN 720 P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134971.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_011658159.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A0A0KN23 | 0.0 | A0A0A0KN23_CUCSA; Uncharacterized protein | ||||
STRING | XP_004134971.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24703 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.045360.1 |
Entrez Gene | 101209093 |
Publications ? help Back to Top | |||
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