![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.045140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 125aa MW: 14048.2 Da PI: 7.6314 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 8.8e-31 | 8 | 57 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l++m+v+gLt++hvkSHLQ Cucsa.045140.1 8 PRLRWTPDLHRCFVHAVERLGGEERATPKMVLQIMNVNGLTISHVKSHLQ 57 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-29 | 4 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-14 | 6 | 58 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-23 | 8 | 57 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 9 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
PYVRSKMPRL RWTPDLHRCF VHAVERLGGE ERATPKMVLQ IMNVNGLTIS HVKSHLQEED 60 YFGSSLKKMH QDLKKLDEET ESVKRVGGEE ITMSLCLSIR GLQPLMSKTG NSDVNDVSLE 120 LSLA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-20 | 9 | 58 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 9 | 58 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 9 | 58 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 9 | 58 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-20 | 9 | 58 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-80 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-80 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134975.2 | 2e-38 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
Refseq | XP_011658141.1 | 1e-38 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
TrEMBL | A0A314Y753 | 2e-39 | A0A314Y753_PRUYE; Putative transcription factor KAN4 | ||||
TrEMBL | M5WLV5 | 1e-39 | M5WLV5_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ14772 | 2e-40 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-31 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.045140.1 |