PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 352aa MW: 39291.2 Da PI: 5.8723

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.044950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	279	313	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Cucsa.044950.1 279 KWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 313 569*****************************885 PP
2	ELK	41.2	3.5e-14	233	254	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Cucsa.044950.1 233 ELKGQLLRKYSGYLGSLKQEFM 254 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	5.4E-19	93	137	IPR005540	KNOX1
Pfam	PF03790	6.5E-22	95	133	IPR005540	KNOX1
SMART	SM01256	5.7E-24	144	195	IPR005541	KNOX2
Pfam	PF03791	4.4E-20	147	193	IPR005541	KNOX2
Pfam	PF03789	5.8E-11	233	254	IPR005539	ELK domain
SMART	SM01188	2.8E-8	233	254	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	233	253	IPR005539	ELK domain
PROSITE profile	PS50071	13.005	253	316	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.88E-19	255	329	IPR009057	Homeodomain-like
SMART	SM00389	7.7E-13	255	320	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-28	258	318	IPR009057	Homeodomain-like
CDD	cd00086	1.21E-12	265	317	No hit	No description
Pfam	PF05920	6.3E-17	273	312	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	291	314	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDVPSGNCSG GMMNFGDQNN NNNNNNGLCS MMMMMPLISA SQQGGDGSSC TPFLPLPPPN 60 YNNNNNTSIC NYFMDETNNN NNDESSNGAN SCCEVKAKIM AHPHYHRLLA AYVNCRKVGA 120 PPEVVARLEE ACASAVTMSS GNNGGGCIGE DPALDQFMEA YCEMLTKYEQ ELSKPFRDAM 180 LFLQRIDSQF KALSISSSHL PPACGEAFDR NGSSEEEVDI NGHSIDPQAE DRELKGQLLR 240 KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSESQKLA LAQSTGLDQK 300 QINNWFINQR KRHWKPSEDM QFVVMDAAHP QYYMDTVLGN PFPLDISPAL L*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDVPSGNCSG GMMNFGDQNN NNNNNNGLCS MMMMMPLISA SQQGGDGSSC TPFLPLPPPN  60
YNNNNNTSIC NYFMDETNNN NNDESSNGAN SCCEVKAKIM AHPHYHRLLA AYVNCRKVGA  120
PPEVVARLEE ACASAVTMSS GNNGGGCIGE DPALDQFMEA YCEMLTKYEQ ELSKPFRDAM  180
LFLQRIDSQF KALSISSSHL PPACGEAFDR NGSSEEEVDI NGHSIDPQAE DRELKGQLLR  240
KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSESQKLA LAQSTGLDQK  300
QINNWFINQR KRHWKPSEDM QFVVMDAAHP QYYMDTVLGN PFPLDISPAL L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	257	LKQEFMKKRK
2	254	258	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-133	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-133	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134981.2	0.0	PREDICTED: homeobox protein knotted-1-like LET6
Swissprot	P46608	1e-146	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A0A0KJU4	0.0	A0A0A0KJU4_CUCSA; Uncharacterized protein
STRING	XP_004134981.1	0.0	(Cucumis sativus)
STRING	XP_004166043.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-136	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Cucsa.044950.1
Entrez Gene	101211566

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]