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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.044690.1 |
| Common Name | Csa_6G511620, LOC101207883 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 542aa MW: 60033.7 Da PI: 6.4154 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.044690.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 415.2 | 6e-127 | 171 | 541 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
+++L++cA+a++++dl+ a+ ++ l +++s +gdp qRl ay++e+L+arl rs+s +yk+l+++e + sse +++++++++++P++kf++
Cucsa.044690.1 171 QDTLIHCAQAIHDSDLNVATLFMDVLGQMVSVSGDPSQRLGAYLLEGLRARLERSGSAIYKSLKCKEPT---SSELMSYMSILFQICPYFKFGYT 262
689*****************************************************************9...999******************** PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
aN I ea+ +e +HiiDf+i qG Q+++L+q La+Rp+gpp lRiTgv++++s + l+ +g++La++A++ g+pf+f++ +a + d
Cucsa.044690.1 263 SANAVIREAMVNEPIIHIIDFQIAQGSQYISLIQDLANRPGGPPaLLRITGVDDSQSAhaRGGGLQIVGQNLAQLAQSKGIPFQFHA-AAMSGCD 356
****************************************8888789*******9988889999***********************.89999** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
+e ++L ++pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+++eqe+++n+++Fl rf+e+l+yy+a+f+s+++ +r++++ri
Cucsa.044690.1 357 VEHSNLIIQPGEALAVNFPYTLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIIEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRI 451
*********************************************************************************************** PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
E+++++r+ivn+vaceg+er+erhe l+kWr+r+++aGF+p+++s +++ ++ +lr ++++ yr++e +g+++lgWk+r++ ++SaWr
Cucsa.044690.1 452 RAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPYTMSPSVTGAVRNMLRDFNEN-YRLQEVDGAIYLGWKNRAMATASAWR 541
**************************************************************55.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MQASQNRQAS SMIHEMDPYY LSGFHVLGNH VSPDASSQGN SVNFSSYKDQ FFTLESFPAT 60
ADLSGSNSPS TGSVLSSRSP FSPQGSQSCS SDQHHSFENT CGSPMSGCSV TDEDNDIKHK 120
LKELEISLLG PESDIVDSCY CSFRGGAHRD ASVARRNWNQ VVEMIPKLNL QDTLIHCAQA 180
IHDSDLNVAT LFMDVLGQMV SVSGDPSQRL GAYLLEGLRA RLERSGSAIY KSLKCKEPTS 240
SELMSYMSIL FQICPYFKFG YTSANAVIRE AMVNEPIIHI IDFQIAQGSQ YISLIQDLAN 300
RPGGPPALLR ITGVDDSQSA HARGGGLQIV GQNLAQLAQS KGIPFQFHAA AMSGCDVEHS 360
NLIIQPGEAL AVNFPYTLHH MPDESVSTQN HRDRLLRLVK SLSPKVVTII EQESNTNTSP 420
FLLRFIETLD YYTAMFESID VARSRDDKQR IRAEQHCVAR DIVNMVACEG FERVERHELL 480
GKWRMRMRMA GFTPYTMSPS VTGAVRNMLR DFNENYRLQE VDGAIYLGWK NRAMATASAW 540
R*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
