PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.044400.2

Common Name

Csa_6G510300, LOC105435941

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 314aa MW: 34248.7 Da PI: 7.0486

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.044400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Cucsa.044400.2 42 KPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-31	39	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.85E-17	42	98	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-15	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MFPRLVNPDG DIQIHGPRGS VASDLTHTHR GDPCLVLTSD PKPRLRWTAD LHERFVDAVT 60 QLGGAGKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDMGEASKD GAYLLESPST 120 NNFSPDLPIS EMADGYEVKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYLAMLERAC 180 KMLADQFIVG AVSDSDSKKS EGQDRKSPRS TSIDPLGFYT TQSQEMERVN GTEEVQANLP 240 CQRADCSTES CLTSNESPGG LAMEKSPAAS KKNMVNLGSA TASLIWSGAK EGIQNANIIQ 300 VNHHGVSGCD MWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658095.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
Swissprot	Q94A57	1e-60	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0A0KL09	0.0	A0A0A0KL09_CUCSA; Uncharacterized protein
STRING	XP_008440945.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.044400.2
Entrez Gene	105435941

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]