PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 263aa MW: 28811.4 Da PI: 9.5703

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.044390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.8e-34	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cucsa.044390.1 19 KQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.699	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-32	18	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-26	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-9	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-24	105	151	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDPTNGNNAT SKSPNLASKQ RLRWTHDLHE RFVNAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKKTDKK DSSDILSNID GSSGMQITEA LKLQMEVQKR 120 LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ KLSGVLSGAP AASAFTAPAS GDNCPEVDKN 180 DPSTPASTSE FPRQEKVSKE RAQGKSVSID DSFSSHHEPL TPDSGCHSSP SESPRPVKKQ 240 IQSKMILAHQ ILESSLNSTH KE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU284118	0.0	EU284118.1 Cucumis sativus putative myb family transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658093.1	0.0	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q9SJW0	1e-116	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	B3FNK5	0.0	B3FNK5_CUCSA; Putative myb family transcription factor
STRING	XP_004134996.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-88	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.044390.1
Entrez Gene	101215173

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]