PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.042770.1 | ||||||||
Common Name | Csa_3G073900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23615.4 Da PI: 8.9293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a+++a+ l+g Cucsa.042770.1 26 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDHAAITLRG 75 7********.**********883....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-12 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-38 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.78E-31 | 26 | 83 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.0E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MRRGRGPAVV PPPREPPTPT TGSDRRYRGV RKRPWGRFAA EIRDPWKKTR VWLGTFDSAE 60 DAARAYDHAA ITLRGSKAKT NFPLPNPTSF FDYPPHPVNA PDPFPDPRYQ IRPTSSSLSS 120 TVESFSGPRP PSSSLPALTS TSPSRRYPRT PPLLPEDCHS DCDSSSSVID DGDDIASSPV 180 VPRKKTPLPF DLNIPPSDLF DFSSDDLRCT ALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 25 | 84 | 4 | 64 | ATERF1 |
3gcc_A | 2e-22 | 25 | 84 | 4 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LM994815 | 0.0 | LM994815.1 Cucumis sativus mRNA for ethylene-responsive transcription factor 7 (erf-7 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295846.1 | 1e-148 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 3e-47 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A0A0L500 | 1e-148 | A0A0A0L500_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149347.1 | 1e-150 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-22 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.042770.1 |