PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.042390.2
Common NameCsa_3G062590, LOC101221408
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 448aa    MW: 51719.8 Da    PI: 6.3306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.042390.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.29.2e-38121351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Pt+eelv++yL++k+ g+++ + ++i+++d+++++Pw+Lp +  +++++ ew+fF +  +      +++r+t sg W++tg dk+++
  Cucsa.042390.2  12 LPIGFRFRPTEEELVTHYLNNKILGRQHLV-QCIPQIDLFNYDPWKLPeRsLLDSDNYEWFFFRSLTS------KTKRTTVSGCWRSTGDDKRIV 99 
                     699************************877.89***************53344445559**9998866......5789***************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +++++ ++k+Lvfy+g+ + ++kt+Wv+hey+l
  Cucsa.042390.2 100 ARgTNKVIATRKILVFYQGQGKAAVKTKWVLHEYHL 135
                     *9667789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-447156IPR003441NAC domain
PROSITE profilePS5100543.52512158IPR003441NAC domain
PfamPF023654.6E-2213135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSFTIPSKH ELPIGFRFRP TEEELVTHYL NNKILGRQHL VQCIPQIDLF NYDPWKLPER  60
SLLDSDNYEW FFFRSLTSKT KRTTVSGCWR STGDDKRIVA RGTNKVIATR KILVFYQGQG  120
KAAVKTKWVL HEYHLFQQDT TDISSSQMPF VVCRLKESAE EFRSDDQRKK SKKRQVHWNG  180
ENDQPALEDF PNTHQPTQPS NYFENEVMNS GFDTDDASSK MFFKTTPWPS ESEPREPGLL  240
NISQQVSDSN SEGNEQLSQP QSSMASEPNS NDQLGWFLNY MVDNDETDQI NVILKRHSME  300
EFQSMARELE AGDTTSVSSE GMRTTIQKSC RKPLIARHCQ YKEENDESQD DSCGQTLKVQ  360
RQPKSNNIVA HRDEPKRDES REVFILQGGN VEKHTSVIYS NETPTNCFWY ILTTKRIHHK  420
SNDQPIDYVA KVLLGFIILI MFVLTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-301216215172Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818602e-97LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132602e-97LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149581.20.0PREDICTED: protein NTM1-like 8 isoform X2
TrEMBLA0A0A0L6570.0A0A0A0L657_CUCSA; Uncharacterized protein
STRINGXP_004149581.10.0(Cucumis sativus)
STRINGXP_004165647.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-38NAC transcription factor-like 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]