PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.031740.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17214.8 Da    PI: 10.2751
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.031740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-171161350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-...TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs...stgklyeys 50
                    i n   r +tf kR++ ++KKA+ELS+LCd++ ++ i+s   ++ ++ +++
  Cucsa.031740.1 11 IPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASdcdPSTHFETWP 61
                    778899*******************************99333456777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-16162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-19181IPR002100Transcription factor, MADS-box
CDDcd002661.31E-19268No hitNo description
PRINTSPR004045.1E-12323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGRGILSLKL IPNPKSRRTT FLKRKKSLIK KAYELSTLCD VQTCLFIASD CDPSTHFETW  60
PPNHHQIHQM IRSYKSHSFT KPNSSYDLNR FFSDRKNKIL TNTSKLLHNV VDHQSEHQLM  120
ELLDALDSKI RVANDMIDQM SLKNTTSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818561e-162LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBankLN7132601e-162LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145650.19e-99PREDICTED: agamous-like MADS-box protein AGL3
TrEMBLA0A0A0LAL92e-97A0A0A0LAL9_CUCSA; Uncharacterized protein
STRINGXP_004145650.13e-98(Cucumis sativus)
STRINGXP_004161337.14e-98(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3111022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-16AGAMOUS-like 82