PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.031290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 198aa MW: 22811.8 Da PI: 7.5413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.7e-08 | 139 | 194 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ ++P + +++ + a++L ++++Y+ sLq Cucsa.031290.1 139 SHSLAERVRREKINHKLKCLQNIIPGCHkvncFFHGPSMGMAMVLDETINYVYSLQ 194 8************************9866776333445677788888888877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.59E-7 | 133 | 198 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-13 | 133 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.246 | 135 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-13 | 135 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-5 | 139 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MTEFRQNLQH FKSSKASEEM TFNMEVINQF SNAMESALED FNETESSVEN FWGYHFQLPE 60 NTSPSSLSNF SSVALLKCQK EFPVITRSSL PVDSAQETMK RKEKQNMEGG RKRRNCEKEQ 120 EKPGEVVHVR AKRGQATDSH SLAERVRREK INHKLKCLQN IIPGCHKVNC FFHGPSMGMA 180 MVLDETINYV YSLQNQVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 113 | KRKEKQNMEGGRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681854 | 1e-140 | LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042. | |||
GenBank | LN713260 | 1e-140 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651378.1 | 1e-126 | PREDICTED: transcription factor BEE 3-like isoform X2 | ||||
TrEMBL | A0A1S3C5R8 | 1e-113 | A0A1S3C5R8_CUCME; transcription factor BEE 3-like isoform X2 | ||||
STRING | XP_008456994.1 | 1e-99 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14412 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 5e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.031290.1 |