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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.027530.2 | ||||||||
Common Name | Csa_1G666970, LOC101216567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 445aa MW: 49339.5 Da PI: 4.9238 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.5e-34 | 230 | 284 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Cucsa.027530.2 230 RPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRT 284 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-18 | 227 | 284 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.477 | 227 | 287 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 228 | 286 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 231 | 284 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-10 | 232 | 283 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.9E-24 | 315 | 362 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MSSSYPVLSK PFEDKYPKLP LSFQGSSQSE AMRHPIPRQA PPLVSNSGTV GHLFSSSSGF 60 RNDFPLMQPL SQERNAQFSP FISRSANDGS LLPSHGSSHS EVQSTMVTGN LNENSASWST 120 DTLQDLLDFS ENIPDQNGQD QNVASVLMSD DQAKRNDWPD WADQFISVDD ALEPNWSEIF 180 SDANAGDPKP EVLKSSSANF NAPPNQTNQV DSLPTVEFHS VSNSLSTSTR PRMRWTPELH 240 EAFVEAVNKL GGSENATPKG VLKLMNVEGL TIYHVKSHLQ KYRTARYKPE SSEGSSGKKI 300 NHIEEMKTLD LKTSMGITEA LRLQMEVQKR LHEQLEIQRN LQLRIEEQGK YLQEMFEQQR 360 KMENKLKTSS SILENMPCAD DQPKNLEQGH DAAGMSTENA EDAREDGLLA ASRKHKGHEG 420 EEVEPDEGNS SPDAKRAKSD ATVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 230 | 288 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 0.0 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142544.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q8GUN5 | 1e-99 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0A0LY82 | 0.0 | A0A0A0LY82_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142544.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004155686.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 8e-99 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.027530.2 |
Entrez Gene | 101216567 |