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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.027530.1 | ||||||||
Common Name | Csa_1G666970, LOC101216567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 456aa MW: 50559.9 Da PI: 4.9963 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.7e-34 | 241 | 295 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Cucsa.027530.1 241 RPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRT 295 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-18 | 238 | 295 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.477 | 238 | 298 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 239 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 242 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-10 | 243 | 294 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.2E-24 | 326 | 373 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MISDKRVAYG VMSSSYPVLS KPFEDKYPKL PLSFQGSSQS EAMRHPIPRQ APPLVSNSGT 60 VGHLFSSSSG FRNDFPLMQP LSQERNAQFS PFISRSANDG SLLPSHGSSH SEVQSTMVTG 120 NLNENSASWS TDTLQDLLDF SENIPDQNGQ DQNVASVLMS DDQAKRNDWP DWADQFISVD 180 DALEPNWSEI FSDANAGDPK PEVLKSSSAN FNAPPNQTNQ VDSLPTVEFH SVSNSLSTST 240 RPRMRWTPEL HEAFVEAVNK LGGSENATPK GVLKLMNVEG LTIYHVKSHL QKYRTARYKP 300 ESSEGSSGKK INHIEEMKTL DLKTSMGITE ALRLQMEVQK RLHEQLEIQR NLQLRIEEQG 360 KYLQEMFEQQ RKMENKLKTS SSILENMPCA DDQPKNLEQG HDAAGMSTEN AEDAREDGLL 420 AASRKHKGHE GEEVEPDEGN SSPDAKRAKS DATVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 241 | 299 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 0.0 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142544.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q8GUN5 | 1e-99 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0A0LY82 | 0.0 | A0A0A0LY82_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142544.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004155686.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 1e-98 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.027530.1 |
Entrez Gene | 101216567 |