PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.027530.1
Common NameCsa_1G666970, LOC101216567
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 456aa    MW: 50559.9 Da    PI: 4.9963
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.027530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.7e-34241295155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +pr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  Cucsa.027530.1 241 RPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRT 295
                     59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-18238295IPR009057Homeodomain-like
PROSITE profilePS5129412.477238298IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-31239297IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24242295IPR006447Myb domain, plants
PfamPF002491.2E-10243294IPR001005SANT/Myb domain
PfamPF143797.2E-24326373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MISDKRVAYG VMSSSYPVLS KPFEDKYPKL PLSFQGSSQS EAMRHPIPRQ APPLVSNSGT  60
VGHLFSSSSG FRNDFPLMQP LSQERNAQFS PFISRSANDG SLLPSHGSSH SEVQSTMVTG  120
NLNENSASWS TDTLQDLLDF SENIPDQNGQ DQNVASVLMS DDQAKRNDWP DWADQFISVD  180
DALEPNWSEI FSDANAGDPK PEVLKSSSAN FNAPPNQTNQ VDSLPTVEFH SVSNSLSTST  240
RPRMRWTPEL HEAFVEAVNK LGGSENATPK GVLKLMNVEG LTIYHVKSHL QKYRTARYKP  300
ESSEGSSGKK INHIEEMKTL DLKTSMGITE ALRLQMEVQK RLHEQLEIQR NLQLRIEEQG  360
KYLQEMFEQQ RKMENKLKTS SSILENMPCA DDQPKNLEQG HDAAGMSTEN AEDAREDGLL  420
AASRKHKGHE GEEVEPDEGN SSPDAKRAKS DATVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30241299260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142544.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ8GUN51e-99PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0A0LY820.0A0A0A0LY82_CUCSA; Uncharacterized protein
STRINGXP_004142544.10.0(Cucumis sativus)
STRINGXP_004155686.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-98G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  7. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]