PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.012940.1
Common NameCsa_3G354510, LOC101211855
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 349aa    MW: 38311.3 Da    PI: 4.6397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.012940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.6e-29142203159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK + g+++pr+YYrCt++   gC ++k+v+rs++dp+++eitY+g+H ++
  Cucsa.012940.1 142 LDDGFAWRKYGQKGILGAKHPRGYYRCTHRnlqGCLATKQVQRSDDDPTIFEITYRGKHSCS 203
                     59***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.376137201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28139204IPR003657WRKY domain
SuperFamilySSF1182901.44E-25141204IPR003657WRKY domain
SMARTSM007747.1E-41142204IPR003657WRKY domain
PfamPF031068.9E-27143202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MENFGEWDQN KLKNELLKGM ELAKQLQIQL NVRPTPSSSM AAAAASSSSS SSSSSDGCEL  60
LVQKIICSYE KALSLLNSYG VQIMYESPSS FNGGSPRSED SDREFKDPFD LTNANSFRKR  120
NILPTWTQKF QVSPGMAIEG SLDDGFAWRK YGQKGILGAK HPRGYYRCTH RNLQGCLATK  180
QVQRSDDDPT IFEITYRGKH SCSQVSNLST PCTTTPEFQQ QNQAPDALLD SWSSLRVITQ  240
NLDTTPLSYD RVEFASASTV DVNFAEFSSF LSPTTSGSGL SYFSASSSGL SEGFVGNQNL  300
NNLQPNNCEI FSSPTSALNT QTTTALDFSF GELQMEPTFS FDNTDFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-22141202768OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818491e-137LN681849.1 Cucumis melo genomic scaffold, anchoredscaffold00116.
GenBankLN7132601e-137LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651414.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0A0LB140.0A0A0A0LB14_CUCSA; Uncharacterized protein
STRINGXP_004172708.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-49WRKY family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]